Personal version

.gitignore

@@ -1,2 +1,3 @@
 public/
 .idea/
+resources/

README.md

@@ -1,42 +1,8 @@
-# [Academic Kickstart](https://sourcethemes.com/academic/)
+# [wojciechkozlowski.eu](https://wojciechkozlowski.eu)
 
-**Academic** makes it easy to create a beautiful website for free using Markdown, Jupyter, or RStudio. Customize anything on your site with widgets, themes, and language packs. [Check out the latest demo](https://academic-demo.netlify.com/) of what you'll get in less than 10 minutes, or [view the showcase](https://sourcethemes.com/academic/#expo).
+My personal website, available at https://wojciechkozlowski.eu, made with
+`hugo` using the [Academic Kickstart](https://sourcethemes.com/academic/)
+template.
 
-**Academic Kickstart** provides a minimal template to kickstart your new website.
-
-- [**Get Started**](#install)
-- [View the documentation](https://sourcethemes.com/academic/docs/)
-- [Ask a question](http://discuss.gohugo.io/)
-- [Request a feature or report a bug](https://github.com/gcushen/hugo-academic/issues)
-- Updating? View the [Update Guide](https://sourcethemes.com/academic/docs/update/) and [Release Notes](https://sourcethemes.com/academic/updates/)
-- Support development of Academic:
-  - [Donate a coffee](https://paypal.me/cushen)
-  - [Become a backer on Patreon](https://www.patreon.com/cushen)
-  - [Decorate your laptop or journal with an Academic sticker](https://www.redbubble.com/people/neutreno/works/34387919-academic)
-  - [Wear the T-shirt](https://academic.threadless.com/)
-
-[![Screenshot](https://raw.githubusercontent.com/gcushen/hugo-academic/master/academic.png)](https://github.com/gcushen/hugo-academic/)
-
-## Install
-
-You can choose from one of the following four methods to install:
-
-* [**one-click install using your web browser (recommended)**](https://sourcethemes.com/academic/docs/install/#install-with-web-browser)
-* [install on your computer using **Git** with the Command Prompt/Terminal app](https://sourcethemes.com/academic/docs/install/#install-with-git)
-* [install on your computer by downloading the **ZIP files**](https://sourcethemes.com/academic/docs/install/#install-with-zip)
-* [install on your computer with **RStudio**](https://sourcethemes.com/academic/docs/install/#install-with-rstudio)
-
-Then [personalize your new site](https://sourcethemes.com/academic/docs/get-started/).
-
-## Ecosystem
-
-* **[Academic Admin](https://github.com/sourcethemes/academic-admin):** An admin tool to import publications from BibTeX or import assets for an offline site
-* **[Academic Scripts](https://github.com/sourcethemes/academic-scripts):** Scripts to help migrate content to new versions of Academic
-
-## License
-
-Copyright 2017-present [George Cushen](https://georgecushen.com).
-
-Released under the [MIT](https://github.com/sourcethemes/academic-kickstart/blob/master/LICENSE.md) license.
-
-[![Analytics](https://ga-beacon.appspot.com/UA-78646709-2/academic-kickstart/readme?pixel)](https://github.com/igrigorik/ga-beacon)
+The upstream repository for this project is on
+[GitHub](https://github.com/sourcethemes/academic-kickstart).

academic-kickstart-readme.md

@@ -0,0 +1,42 @@
+# [Academic Kickstart](https://sourcethemes.com/academic/)
+
+**Academic** makes it easy to create a beautiful website for free using Markdown, Jupyter, or RStudio. Customize anything on your site with widgets, themes, and language packs. [Check out the latest demo](https://academic-demo.netlify.com/) of what you'll get in less than 10 minutes, or [view the showcase](https://sourcethemes.com/academic/#expo).
+
+**Academic Kickstart** provides a minimal template to kickstart your new website.
+
+- [**Get Started**](#install)
+- [View the documentation](https://sourcethemes.com/academic/docs/)
+- [Ask a question](http://discuss.gohugo.io/)
+- [Request a feature or report a bug](https://github.com/gcushen/hugo-academic/issues)
+- Updating? View the [Update Guide](https://sourcethemes.com/academic/docs/update/) and [Release Notes](https://sourcethemes.com/academic/updates/)
+- Support development of Academic:
+  - [Donate a coffee](https://paypal.me/cushen)
+  - [Become a backer on Patreon](https://www.patreon.com/cushen)
+  - [Decorate your laptop or journal with an Academic sticker](https://www.redbubble.com/people/neutreno/works/34387919-academic)
+  - [Wear the T-shirt](https://academic.threadless.com/)
+
+[![Screenshot](https://raw.githubusercontent.com/gcushen/hugo-academic/master/academic.png)](https://github.com/gcushen/hugo-academic/)
+
+## Install
+
+You can choose from one of the following four methods to install:
+
+* [**one-click install using your web browser (recommended)**](https://sourcethemes.com/academic/docs/install/#install-with-web-browser)
+* [install on your computer using **Git** with the Command Prompt/Terminal app](https://sourcethemes.com/academic/docs/install/#install-with-git)
+* [install on your computer by downloading the **ZIP files**](https://sourcethemes.com/academic/docs/install/#install-with-zip)
+* [install on your computer with **RStudio**](https://sourcethemes.com/academic/docs/install/#install-with-rstudio)
+
+Then [personalize your new site](https://sourcethemes.com/academic/docs/get-started/).
+
+## Ecosystem
+
+* **[Academic Admin](https://github.com/sourcethemes/academic-admin):** An admin tool to import publications from BibTeX or import assets for an offline site
+* **[Academic Scripts](https://github.com/sourcethemes/academic-scripts):** Scripts to help migrate content to new versions of Academic
+
+## License
+
+Copyright 2017-present [George Cushen](https://georgecushen.com).
+
+Released under the [MIT](https://github.com/sourcethemes/academic-kickstart/blob/master/LICENSE.md) license.
+
+[![Analytics](https://ga-beacon.appspot.com/UA-78646709-2/academic-kickstart/readme?pixel)](https://github.com/igrigorik/ga-beacon)

config/_default/config.toml

@@ -5,7 +5,7 @@
 # Each configuration section is defined by a name in square brackets (e.g. `[outputs]`).
 
 # Title of your site
-title = "Academic"
+title = "Dr. Robot"
 
 # The URL of your site.
 # End your URL with a `/` trailing slash, e.g. `https://example.com/`.

config/_default/menus.toml

@@ -9,28 +9,33 @@
   weight = 10
 
 [[main]]
-  name = "Posts"
-  url = "#posts"
-  weight = 20
+  name = "Experience"
+  url = "#experience"
+  weight = 40
 
-[[main]]
-  name = "Projects"
-  url = "#projects"
-  weight = 30
+# [[main]]
+#   name = "Posts"
+#   url = "#posts"
+#   weight = 20
+
+# [[main]]
+#   name = "Projects"
+#   url = "#projects"
+#   weight = 30
 
 [[main]]
   name = "Publications"
-  url = "#featured"
+  url = "#publications"
   weight = 40
 
 [[main]]
   name = "Contact"
   url = "#contact"
-  weight = 60
+  weight = 50
 
 # Link to a PDF of your resume/CV from the menu.
 # To enable, copy your resume/CV to `static/files/cv.pdf` and uncomment the lines below.
-# [[main]]
-#    name = "CV"
-#    url = "files/cv.pdf"
-#    weight = 70
+[[main]]
+   name = "CV"
+   url = "files/cv.pdf"
+   weight = 60

config/_default/params.toml

@@ -3,7 +3,7 @@
 
 # Color theme.
 #   Choose from `default`, `ocean`, `forest`, `dark`, `apogee`, `1950s`, `coffee`, `rose`, `strawberry`, `mr_robot`.
-color_theme = "default"
+color_theme = "ocean"
 # Enable users to switch between day and night mode?
 day_night = true
 
@@ -49,33 +49,33 @@ edit_page = {repo_url = "", repo_branch = "master", editable = {docs = true, pag
 
 # Date and time format (refer to https://sourcethemes.com/academic/docs/customization/#date-format )
 #   Examples: "Mon, Jan 2, 2006" or "2006-01-02"
-date_format = "Jan 2, 2006"
+date_format = "2 Jan 2006"
 #   Examples: "3:04 pm" or "15:04"
-time_format = "3:04 PM"
+time_format = "15:04"
 
 ############################
 ## Contact Widget setup   ##
 ############################
 
 # Enter contact details (optional). To hide a field, clear it to "".
-email = "test@example.org"
-phone = "888 888 88 88"
-address = "Building 1 Room 1, Stanford University, California, 90210, USA"
+email = "website@wojciechkozlowski.eu"
+phone = ""
+address = ""
 
 # Office hours: use `<br>` to insert a line break, or set to "" to remove office hours
-office_hours = """Monday 10:00 to 13:00<br>
-                  Wednesday 09:00 to 10:00"""
+office_hours = """"""
 
 # Enter an optional link for booking appointments (e.g. calendly.com).
-appointment_url = "https://calendly.com"
+appointment_url = ""
 
 # Contact links
 #   Set to `[]` to disable, or comment out unwanted lines with a hash `#`.
 contact_links = [
-  {icon = "twitter", icon_pack = "fab", name = "DM Me", link = "https://twitter.com/Twitter"},
-  {icon = "skype", icon_pack = "fab", name = "Skype Me", link = "skype:echo123?call"},
-  {icon = "keybase", icon_pack = "fab", name = "Chat on Keybase", link = "https://keybase.io/"},
-  {icon = "comments", icon_pack = "fas", name = "Discuss on Forum", link = "https://discourse.gohugo.io"},
+#   {icon = "twitter", icon_pack = "fab", name = "DM Me", link = "https://twitter.com/Twitter"},
+#   {icon = "skype", icon_pack = "fab", name = "Skype Me", link = "skype:echo123?call"},
+#   {icon = "keybase", icon_pack = "fab", name = "Chat on Keybase", link = "https://keybase.io/"},
+#   {icon = "comments", icon_pack = "fas", name = "Discuss on Forum", link = "https://discourse.gohugo.io"},
+  {icon = "linkedin", icon_pack = "fab", name = "Message me on LinkedIn", link = "https://www.linkedin.com/in/wojciech-kozlowski-a04638161/"},
   # {icon = "telegram", icon_pack = "fab", name = "Telegram Me", link = "https://telegram.me/@Telegram"},
   ]
 

content/authors/admin/_index.md

@@ -1,6 +1,6 @@
 ---
 # Display name
-name: Nelson Bighetti
+name: Wojciech Kozlowski
 
 # Username (this should match the folder name)
 authors:
@@ -10,66 +10,74 @@ authors:
 superuser: true
 
 # Role/position
-role: Professor of Artificial Intelligence
+role: Postdoctoral Researcher
 
 # Organizations/Affiliations
 organizations:
-- name: Stanford University
-  url: ""
+- name: QuTech, TU Delft
+  url: "https://qutech.nl"
 
 # Short bio (displayed in user profile at end of posts)
-bio: My research interests include distributed robotics, mobile computing and programmable matter.
+bio: My day job is to research quantum network architectures.
 
 interests:
-- Artificial Intelligence
-- Computational Linguistics
-- Information Retrieval
+- Quantum Networks
+- Computer Networks
+- Quantum Computing
 
 education:
   courses:
-  - course: PhD in Artificial Intelligence
-    institution: Stanford University
+  - course: DPhil in Atomic and Laser Physics
+    institution: University of Oxford
+    year: 2016
+  - course: MSci in Theoretical Quantum Physics
+    institution: University of Cambridge
     year: 2012
-  - course: MEng in Artificial Intelligence
-    institution: Massachusetts Institute of Technology
-    year: 2009
-  - course: BSc in Artificial Intelligence
-    institution: Massachusetts Institute of Technology
-    year: 2008
 
 # Social/Academic Networking
 # For available icons, see: https://sourcethemes.com/academic/docs/widgets/#icons
 #   For an email link, use "fas" icon pack, "envelope" icon, and a link in the
 #   form "mailto:your-email@example.com" or "#contact" for contact widget.
 social:
-- icon: envelope
-  icon_pack: fas
-  link: '#contact'  # For a direct email link, use "mailto:test@example.org".
-- icon: twitter
+- icon: linkedin
   icon_pack: fab
-  link: https://twitter.com/GeorgeCushen
+  link: https://www.linkedin.com/in/wojciech-kozlowski-a04638161/
+- icon: zotero
+  icon_pack: ai
+  link: https://www.zotero.org/wojtek242
 - icon: google-scholar
   icon_pack: ai
-  link: https://scholar.google.co.uk/citations?user=sIwtMXoAAAAJ
+  link: https://scholar.google.com/citations?user=tAg_NmMAAAAJ
 - icon: github
   icon_pack: fab
-  link: https://github.com/gcushen
+  link: https://github.com/wojtek242
 # Link to a PDF of your resume/CV from the About widget.
 # To enable, copy your resume/CV to `static/files/cv.pdf` and uncomment the lines below.  
-# - icon: cv
-#   icon_pack: ai
-#   link: files/cv.pdf
+- icon: cv
+  icon_pack: ai
+  link: files/cv.pdf
 
 # Enter email to display Gravatar (if Gravatar enabled in Config)
 email: ""
   
 # Organizational groups that you belong to (for People widget)
 #   Set this to `[]` or comment out if you are not using People widget.  
-user_groups:
-- Researchers
-- Visitors
+# user_groups:
+# - Researchers
+# - Visitors
 ---
 
-Nelson Bighetti is a professor of artificial intelligence at the Stanford AI Lab. His research interests include distributed robotics, mobile computing and programmable matter. He leads the Robotic Neurobiology group, which develops self-reconfiguring robots, systems of self-organizing robots, and mobile sensor networks.
+I am a postdoctoral researcher at QuTech at the Delft University of
+Technology. My work is focused on developing the network and software
+architecture for quantum networks. I am part of Stephanie Wehner's Quantum
+Software group which places me within the Quantum Internet and Networked
+Computing Roadmap at QuTech and the Quantum Internet Alliance funded by the
+European Union's Quantum Flagship program.
 
-Lorem ipsum dolor sit amet, consectetur adipiscing elit. Sed neque elit, tristique placerat feugiat ac, facilisis vitae arcu. Proin eget egestas augue. Praesent ut sem nec arcu pellentesque aliquet. Duis dapibus diam vel metus tempus vulputate. 
+I did my MSci and PhD in quantum physics, but after graduating from Oxford I
+worked as a software engineer for two years in the network software team at
+Metaswitch. This has placed me in the unusual position of having experience in
+both computer networking and quantum physics which is how I ended up at
+QuTech. Through my brief stint in industry I have also acquired an interest in
+purely classical topics such as software-defined networking and programming
+languages like Rust.

content/home/accomplishments.md

@@ -2,7 +2,7 @@
 # Accomplishments widget.
 widget = "accomplishments"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 50  # Order that this section will appear.
 
 title = "Accomplish­ments"

content/home/demo.md

@@ -1,72 +0,0 @@
-+++
-# A Demo section created with the Blank widget.
-# Any elements can be added in the body: https://sourcethemes.com/academic/docs/writing-markdown-latex/
-# Add more sections by duplicating this file and customizing to your requirements.
-
-widget = "blank"  # See https://sourcethemes.com/academic/docs/page-builder/
-headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
-weight = 15  # Order that this section will appear.
-
-title = "Academic Kickstart"
-subtitle = ""
-
-[design]
-  # Choose how many columns the section has. Valid values: 1 or 2.
-  columns = "1"
-
-[design.background]
-  # Apply a background color, gradient, or image.
-  #   Uncomment (by removing `#`) an option to apply it.
-  #   Choose a light or dark text color by setting `text_color_light`.
-  #   Any HTML color name or Hex value is valid.
-
-  # Background color.
-  # color = "navy"
-  
-  # Background gradient.
-  gradient_start = "DarkGreen"
-  gradient_end = "ForestGreen"
-  
-  # Background image.
-  # image = "image.jpg"  # Name of image in `static/img/`.
-  # image_darken = 0.6  # Darken the image? Range 0-1 where 0 is transparent and 1 is opaque.
-
-  # Text color (true=light or false=dark).
-  text_color_light = true
-
-[design.spacing]
-  # Customize the section spacing. Order is top, right, bottom, left.
-  padding = ["20px", "0", "20px", "0"]
-
-[advanced]
- # Custom CSS. 
- css_style = ""
- 
- # CSS class.
- css_class = ""
-+++
-
-Welcome to the **Academic Kickstart** template!
-
-Follow our [Getting Started](https://sourcethemes.com/academic/docs/get-started/) and [Page Builder](https://sourcethemes.com/academic/docs/widgets/) guides to easily personalize the template and then [add your own content](https://sourcethemes.com/academic/docs/managing-content/).
-
-For inspiration, check out [the Markdown files](https://sourcethemes.com/academic/docs/install/#demo-content) which power the [personal demo](https://academic-demo.netlify.com/). The easiest way to publish your new site to the internet is with [Netlify](https://sourcethemes.com/academic/docs/deployment/).
-
-- [View the documentation](https://sourcethemes.com/academic/docs/)
-- [Ask a question](http://discuss.gohugo.io/)
-- [Request a feature or report a bug](https://github.com/gcushen/hugo-academic/issues)
-- Updating? View the [Update Guide](https://sourcethemes.com/academic/docs/update/) and [Release Notes](https://sourcethemes.com/academic/updates/)
-- Support development of Academic:
-  - [Donate a coffee](https://paypal.me/cushen)
-  - [Become a backer on Patreon](https://www.patreon.com/cushen)
-  - [Decorate your laptop or journal with an Academic sticker](https://www.redbubble.com/people/neutreno/works/34387919-academic)
-  - [Wear the T-shirt](https://academic.threadless.com/)
-
-{{% alert note %}}
-This homepage section is an example of adding [elements](https://sourcethemes.com/academic/docs/writing-markdown-latex/) to the [*Blank* widget](https://sourcethemes.com/academic/docs/widgets/).
-
-Backgrounds can be applied to any section. Here, the *background* option is set give a *color gradient*.
-
-**To remove this section, delete `content/home/demo.md`.**
-{{% /alert %}}

content/home/experience.md

@@ -18,27 +18,46 @@ date_format = "Jan 2006"
 #   Leave `date_end` empty if it's your current employer.
 #   Begin/end multi-line descriptions with 3 quotes `"""`.
 [[experience]]
-  title = "CEO"
-  company = "GenCoin"
-  company_url = ""
-  location = "California"
-  date_start = "2017-01-01"
+  title = "Postdoctoral Researcher"
+  company = "QuTech, TU Delft"
+  company_url = "https://qutech.nl"
+  location = "Delft, Netherlands"
+  date_start = "2019-02-01"
   date_end = ""
   description = """
-  Responsibilities include:
+  Developing network and software architecture for quantum networks.
   
-  * Analysing
-  * Modelling
-  * Deploying
+  Teaching and supervising computer science and physics research students.
   """
 
 [[experience]]
-  title = "Professor"
-  company = "University X"
-  company_url = ""
-  location = "California"
-  date_start = "2016-01-01"
-  date_end = "2016-12-31"
-  description = """Taught electronic engineering and researched semiconductor physics."""
+  title = "Software Engineer"
+  company = "Metaswitch"
+  company_url = "https://www.metaswitch.com"
+  location = "London, UK"
+  date_start = "2016-10-03"
+  date_end = "2018-12-31"
+  description = """
+  Worked on the Hardware Abstraction Layer (HAL) for the Metaswitch layer 2 and
+  layer 3 (IP and MPLS) control plane stack as part of the network software
+  team.
+  
+  Led C++ education and adoption within my team which began to move away from C
+  shortly before I arrived.
+  """
+
+[[experience]]
+  title = "DPhil Student Researcher"
+  company = "Department of Physics, University of Oxford"
+  company_url = "https://www2.physics.ox.ac.uk/"
+  location = "Oxford, UK"
+  date_start = "2012-10-01"
+  date_end = "2016-09-30"
+  description = """
+  Theoretical research on the competition between weak quantum measurement and
+  many-body dynamics in ultracold bosonic gases.
+  
+  Taught atomic physics and mathematics to physics undergraduate students.
+  """
 
 +++

content/home/featured.md

@@ -5,7 +5,7 @@
 
 widget = "featured"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 80  # Order that this section will appear.
 
 title = "Featured Publications"

content/home/posts.md

@@ -4,10 +4,10 @@
 
 widget = "pages"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 60  # Order that this section will appear.
 
-title = "Recent Posts"
+title = "Blog Posts"
 subtitle = ""
 
 [content]

content/home/projects.md

@@ -2,7 +2,7 @@
 # A Projects section created with the Portfolio widget.
 widget = "portfolio"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 65  # Order that this section will appear.
 
 title = "Projects"
@@ -42,7 +42,7 @@ subtitle = ""
   #   2 = Compact
   #   3 = Card
   #   5 = Showcase
-  view = 3
+  view = 1
 
   # For Showcase view, flip alternate rows?
   flip_alt_rows = false

content/home/publications.md

@@ -7,7 +7,7 @@ headless = true  # This file represents a page section.
 active = true  # Activate this widget? true/false
 weight = 90  # Order that this section will appear.
 
-title = "Recent Publications"
+title = "Publications"
 subtitle = ""
 
 [content]

content/home/skills.md

@@ -2,7 +2,7 @@
 # A Skills section created with the Featurette widget.
 widget = "featurette"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 30  # Order that this section will appear.
 
 title = "Skills"

content/home/tags.md

@@ -2,7 +2,7 @@
 # Tag Cloud widget.
 widget = "tag_cloud"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 120  # Order that this section will appear.
 
 title = "Popular Topics"

content/home/talks.md

@@ -4,7 +4,7 @@
 
 widget = "pages"  # See https://sourcethemes.com/academic/docs/page-builder/
 headless = true  # This file represents a page section.
-active = true  # Activate this widget? true/false
+active = false  # Activate this widget? true/false
 weight = 70  # Order that this section will appear.
 
 title = "Recent & Upcoming Talks"

content/project/cqc/index.md

@@ -0,0 +1,45 @@
++++
+title = "Cqc"
+date = 2019-04-02T00:35:36+02:00
+draft = false
+
+# Tags: can be used for filtering projects.
+# Example: `tags = ["machine-learning", "deep-learning"]`
+tags = []
+
+# Project summary to display on homepage.
+summary = ""
+
+# Slides (optional).
+#   Associate this page with Markdown slides.
+#   Simply enter your slide deck's filename without extension.
+#   E.g. `slides = "example-slides"` references 
+#   `content/slides/example-slides.md`.
+#   Otherwise, set `slides = ""`.
+slides = ""
+
+# Optional external URL for project (replaces project detail page).
+external_link = ""
+
+# Links (optional).
+url_pdf = ""
+url_code = ""
+url_dataset = ""
+url_slides = ""
+url_video = ""
+url_poster = ""
+
+# Custom links (optional).
+#   Uncomment line below to enable. For multiple links, use the form `[{...}, {...}, {...}]`.
+# links = [{icon_pack = "fab", icon="twitter", name="Follow", url = "https://twitter.com"}]
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder. 
+[image]
+  # Caption (optional)
+  caption = ""
+
+  # Focal point (optional)
+  # Options: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight
+  focal_point = ""
++++

content/project/emacs/index.md

@@ -0,0 +1,27 @@
++++
+title = ".emacs.d"
+date = 2019-04-02T00:23:31+02:00
+draft = false
+
+# Tags: can be used for filtering projects.
+# Example: `tags = ["machine-learning", "deep-learning"]`
+tags = []
+
+# Project summary to display on homepage.
+summary = "My heavily customised Emacs init files."
+
+# Optional external URL for project (replaces project detail page).
+external_link = ""
+
+url_code = "https://github.com/Wojtek242/.emacs.d"
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder. 
+[image]
+  # Caption (optional)
+  caption = ""
+
+  # Focal point (optional)
+  # Options: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight
+  focal_point = "Left"
++++

content/project/loki/index.md

@@ -0,0 +1,45 @@
++++
+title = "Loki"
+date = 2019-04-02T00:35:40+02:00
+draft = false
+
+# Tags: can be used for filtering projects.
+# Example: `tags = ["machine-learning", "deep-learning"]`
+tags = []
+
+# Project summary to display on homepage.
+summary = ""
+
+# Slides (optional).
+#   Associate this page with Markdown slides.
+#   Simply enter your slide deck's filename without extension.
+#   E.g. `slides = "example-slides"` references 
+#   `content/slides/example-slides.md`.
+#   Otherwise, set `slides = ""`.
+slides = ""
+
+# Optional external URL for project (replaces project detail page).
+external_link = ""
+
+# Links (optional).
+url_pdf = ""
+url_code = ""
+url_dataset = ""
+url_slides = ""
+url_video = ""
+url_poster = ""
+
+# Custom links (optional).
+#   Uncomment line below to enable. For multiple links, use the form `[{...}, {...}, {...}]`.
+# links = [{icon_pack = "fab", icon="twitter", name="Follow", url = "https://twitter.com"}]
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder. 
+[image]
+  # Caption (optional)
+  caption = ""
+
+  # Focal point (optional)
+  # Options: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight
+  focal_point = ""
++++

content/project/pylg/index.md

@@ -0,0 +1,45 @@
++++
+title = "Pylg"
+date = 2019-04-02T00:36:06+02:00
+draft = false
+
+# Tags: can be used for filtering projects.
+# Example: `tags = ["machine-learning", "deep-learning"]`
+tags = []
+
+# Project summary to display on homepage.
+summary = ""
+
+# Slides (optional).
+#   Associate this page with Markdown slides.
+#   Simply enter your slide deck's filename without extension.
+#   E.g. `slides = "example-slides"` references 
+#   `content/slides/example-slides.md`.
+#   Otherwise, set `slides = ""`.
+slides = ""
+
+# Optional external URL for project (replaces project detail page).
+external_link = ""
+
+# Links (optional).
+url_pdf = ""
+url_code = ""
+url_dataset = ""
+url_slides = ""
+url_video = ""
+url_poster = ""
+
+# Custom links (optional).
+#   Uncomment line below to enable. For multiple links, use the form `[{...}, {...}, {...}]`.
+# links = [{icon_pack = "fab", icon="twitter", name="Follow", url = "https://twitter.com"}]
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder. 
+[image]
+  # Caption (optional)
+  caption = ""
+
+  # Focal point (optional)
+  # Options: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight
+  focal_point = ""
++++

content/project/rust-sucks-less/index.md

@@ -0,0 +1,45 @@
++++
+title = "Rust Sucks Less"
+date = 2019-04-02T00:35:59+02:00
+draft = false
+
+# Tags: can be used for filtering projects.
+# Example: `tags = ["machine-learning", "deep-learning"]`
+tags = []
+
+# Project summary to display on homepage.
+summary = ""
+
+# Slides (optional).
+#   Associate this page with Markdown slides.
+#   Simply enter your slide deck's filename without extension.
+#   E.g. `slides = "example-slides"` references 
+#   `content/slides/example-slides.md`.
+#   Otherwise, set `slides = ""`.
+slides = ""
+
+# Optional external URL for project (replaces project detail page).
+external_link = ""
+
+# Links (optional).
+url_pdf = ""
+url_code = ""
+url_dataset = ""
+url_slides = ""
+url_video = ""
+url_poster = ""
+
+# Custom links (optional).
+#   Uncomment line below to enable. For multiple links, use the form `[{...}, {...}, {...}]`.
+# links = [{icon_pack = "fab", icon="twitter", name="Follow", url = "https://twitter.com"}]
+
+# Featured image
+# To use, add an image named `featured.jpg/png` to your page's folder. 
+[image]
+  # Caption (optional)
+  caption = ""
+
+  # Focal point (optional)
+  # Options: Smart, Center, TopLeft, Top, TopRight, Left, Right, BottomLeft, Bottom, BottomRight
+  focal_point = ""
++++

content/publication/elliott-multipartite-2015/elliott-multipartite-2015.bib

@@ -0,0 +1,12 @@
+@article{elliott_multipartite_2015,
+ author = {Elliott, T. J. and Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+ doi = {10.1103/PhysRevLett.114.113604},
+ journal = {Physical Review Letters},
+ month = {March},
+ number = {11},
+ pages = {113604},
+ title = {Multipartite Entangled Spatial Modes of Ultracold Atoms Generated and Controlled by Quantum Measurement},
+ volume = {114},
+ year = {2015}
+}
+

content/publication/elliott-multipartite-2015/index.md

@@ -0,0 +1,13 @@
++++
+title = "Multipartite Entangled Spatial Modes of Ultracold Atoms Generated and Controlled by Quantum Measurement"
+date = 2015-03-01
+authors = ["T. J. Elliott", "W. Kozlowski", "S. F. Caballero-Benitez", "I. B. Mekhov"]
+publication_types = ["2"]
+abstract = "We show that the effect of measurement backaction results in the generation of multiple many-body spatial modes of ultracold atoms trapped in an optical lattice, when scattered light is detected. The multipartite mode entanglement properties and their nontrivial spatial overlap can be varied by tuning the optical geometry in a single setup. This can be used to engineer quantum states and dynamics of matter fields. We provide examples of multimode generalizations of parametric down-conversion, Dicke, and other states; investigate the entanglement properties of such states; and show how they can be transformed into a class of generalized squeezed states. Furthermore, we propose how these modes can be used to detect and measure entanglement in quantum gases."
+featured = false
+publication = "*Physical Review Letters*"
+url_pdf = "https://link.aps.org/doi/10.1103/PhysRevLett.114.113604"
+url_preprint = "https://arxiv.org/abs/1412.4680"
+doi = "10.1103/PhysRevLett.114.113604"
++++
+

content/publication/elliott-probing-2015/elliott-probing-2015.bib

@@ -0,0 +1,12 @@
+@article{elliott_probing_2015,
+ author = {Elliott, Thomas J. and Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+ doi = {10.3390/atoms3030392},
+ journal = {Atoms},
+ month = {September},
+ number = {3},
+ pages = {392--406},
+ title = {Probing and Manipulating Fermionic and Bosonic Quantum Gases with Quantum Light},
+ volume = {3},
+ year = {2015}
+}
+

content/publication/elliott-probing-2015/index.md

@@ -0,0 +1,14 @@
++++
+title = "Probing and Manipulating Fermionic and Bosonic Quantum Gases with Quantum Light"
+date = 2015-09-01
+authors = ["Thomas J. Elliott", "Gabriel Mazzucchi", "Wojciech Kozlowski", "Santiago F. Caballero-Benitez", "Igor B. Mekhov"]
+publication_types = ["2"]
+abstract = "We study the atom-light interaction in the fully quantum regime, with the focus on off-resonant light scattering into a cavity from ultracold atoms trapped in an optical lattice. The detection of photons allows the quantum nondemolition (QND) measurement of quantum correlations of the atomic ensemble, distinguishing between different quantum states. We analyse the entanglement between light and matter and show how it can be exploited for realising multimode macroscopic quantum superpositions, such as Schrödinger cat states, for both bosons and fermions. We provide examples utilising different measurement schemes and study their robustness to decoherence. Finally, we address the regime where the optical lattice potential is a quantum dynamical variable and is modified by the atomic state, leading to novel quantum phases and significantly altering the phase diagram of the atomic system."
+featured = false
+publication = "*Atoms*"
+tags = ["cavity QED", "many-body quantum systems", "quantum light-matter interactions", "quantum nondemolition measurement"]
+url_pdf = "https://www.mdpi.com/2218-2004/3/3/392"
+url_preprint = "https://arxiv.org/abs/1506.07700"
+doi = "10.3390/atoms3030392"
++++
+

content/publication/granqvist-buffering-2012/granqvist-buffering-2012.bib

@@ -0,0 +1,14 @@
+@article{granqvist_buffering_2012,
+ author = {Granqvist, Emma and Wysham, Derin and Hazledine, Saul and Kozlowski, Wojciech and Sun, Jongho and Charpentier, Myriam and Martins, Teresa Vaz and Haleux, Pauline and Tsaneva-Atanasova, Krasimira and Downie, J. Allan and Oldroyd, Giles E. D. and Morris, Richard J.},
+ doi = {10.1104/pp.112.205682},
+ issn = {0032-0889, 1532-2548},
+ journal = {Plant Physiology},
+ month = {December},
+ number = {4},
+ pages = {2300--2310},
+ pmid = {23027664},
+ title = {Buffering Capacity Explains Signal Variation in Symbiotic Calcium Oscillations},
+ volume = {160},
+ year = {2012}
+}
+

content/publication/granqvist-buffering-2012/index.md

@@ -0,0 +1,12 @@
++++
+title = "Buffering Capacity Explains Signal Variation in Symbiotic Calcium Oscillations"
+date = 2012-12-01
+authors = ["Emma Granqvist", "Derin Wysham", "Saul Hazledine", "Wojciech Kozlowski", "Jongho Sun", "Myriam Charpentier", "Teresa Vaz Martins", "Pauline Haleux", "Krasimira Tsaneva-Atanasova", "J. Allan Downie", "Giles E. D. Oldroyd", "Richard J. Morris"]
+publication_types = ["2"]
+abstract = "Legumes form symbioses with rhizobial bacteria and arbuscular mycorrhizal fungi that aid plant nutrition. A critical component in the establishment of these symbioses is nuclear-localized calcium (Ca2+) oscillations. Different components on the nuclear envelope have been identified as being required for the generation of the Ca2+ oscillations. Among these an ion channel, Doesn't Make Infections1, is preferentially localized on the inner nuclear envelope and a Ca2+ ATPase is localized on both the inner and outer nuclear envelopes. Doesn't Make Infections1 is conserved across plants and has a weak but broad similarity to bacterial potassium channels. A possible role for this cation channel could be hyperpolarization of the nuclear envelope to counterbalance the charge caused by the influx of Ca2+ into the nucleus. Ca2+ channels and Ca2+ pumps are needed for the release and reuptake of Ca2+ from the internal store, which is hypothesized to be the nuclear envelope lumen and endoplasmic reticulum, but the release mechanism of Ca2+ remains to be identified and characterized. Here, we develop a mathematical model based on these components to describe the observed symbiotic Ca2+ oscillations. This model can recapitulate Ca2+ oscillations, and with the inclusion of Ca2+-binding proteins it offers a simple explanation for several previously unexplained phenomena. These include long periods of frequency variation, changes in spike shape, and the initiation and termination of oscillations. The model also predicts that an increase in buffering capacity in the nucleoplasm would cause a period of rapid oscillations. This phenomenon was observed experimentally by adding more of the inducing signal."
+featured = false
+publication = "*Plant Physiology*"
+url_pdf = "http://www.plantphysiol.org/content/160/4/2300"
+doi = "10.1104/pp.112.205682"
++++
+

content/publication/kozlowski-dphil-2016/index.md

@@ -0,0 +1,20 @@
++++
+title = "Competition between weak quantum measurement and many-body dynamics in ultracold bosonic gases"
+date = 2016-09-30
+authors = ["Wojciech Kozlowski"]
+
+publication_types = ["7"]
+publication = "*University of Oxford*"
+
+abstract = """Trapping ultracold atoms in optical lattices enabled the study of strongly correlated phenomena in an environment that is far more controllable and tunable than what was possible in condensed matter. Here, we consider coupling these systems to quantised light where the quantum nature of both the optical and matter fields play equally important roles in order to push the boundaries of what is possible in ultracold atomic systems.
+
+We show that light can serve as a nondestructive probe of the quantum state of matter. By considering a global measurement we show that it is possible to distinguish a highly delocalised phase like a superfluid from the Bose glass and Mott insulator. We also demonstrate that light scattering reveals not only density correlations, but also matter-field interference.
+
+By taking into account the effect of measurement backaction we show that the measurement can efficiently compete with the local atomic dynamics of the quantum gas. This can generate long-range correlations and entanglement which in turn leads to macroscopic multimode oscillations across the whole lattice when the measurement is weak and correlated tunnelling, as well as selective suppression and enhancement of dynamical processes beyond the projective limit of the quantum Zeno effect in the strong measurement regime.
+
+We also consider quantum measurement backaction due to the measurement of matter-phase-related variables such as global phase coherence. We show how this unconventional approach opens up new opportunities to affect system evolution and demonstrate how this can lead to a new class of measurement projections thus extending the measurement postulate for the case of strong competition with the system's own evolution."""
+
+featured = false
+url_pdf = "https://ora.ox.ac.uk/objects/uuid:8da45dd9-27f9-42b6-8bae-8001d0154966"
+
++++

content/publication/kozlowski-dphil-2016/kozlowski-dphil-2016.bib

@@ -0,0 +1,8 @@
+@phdthesis{kozlowski_dphil_2016,
+ author = {Kozlowski, Wojciech},
+ school = {University of Oxford},
+ month = {September},
+ title = {Competition between weak quantum measurement and many-body dynamics in ultracold bosonic gases},
+ year = {2016}
+}
+

content/publication/kozlowski-non-hermitian-2016/index.md

@@ -0,0 +1,13 @@
++++
+title = "Non-Hermitian dynamics in the quantum Zeno limit"
+date = 2016-07-01
+authors = ["W. Kozlowski", "S. F. Caballero-Benitez", "I. B. Mekhov"]
+publication_types = ["2"]
+abstract = "We show that weak measurement leads to unconventional quantum Zeno dynamics with Raman-like transitions via virtual states outside the Zeno subspace. We extend this concept into the realm of non-Hermitian dynamics by showing that the stochastic competition between measurement and a system's own dynamics can be described by a non-Hermitian Hamiltonian. We obtain a solution for ultracold bosons in a lattice and show that a dark state of tunneling is achieved as a steady state in which the observable's fluctuations are zero and tunneling is suppressed by destructive matter-wave interference."
+featured = false
+publication = "*Physical Review A*"
+url_pdf = "https://link.aps.org/doi/10.1103/PhysRevA.94.012123"
+url_preprint = "https://arxiv.org/abs/1510.04857"
+doi = "10.1103/PhysRevA.94.012123"
++++
+

content/publication/kozlowski-non-hermitian-2016/kozlowski-non-hermitian-2016.bib

@@ -0,0 +1,12 @@
+@article{kozlowski_non-hermitian_2016,
+ author = {Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+ doi = {10.1103/PhysRevA.94.012123},
+ journal = {Physical Review A},
+ month = {July},
+ number = {1},
+ pages = {012123},
+ title = {Non-Hermitian dynamics in the quantum Zeno limit},
+ volume = {94},
+ year = {2016}
+}
+

content/publication/kozlowski-probing-2015/index.md

@@ -0,0 +1,13 @@
++++
+title = "Probing matter-field and atom-number correlations in optical lattices by global nondestructive addressing"
+date = 2015-07-01
+authors = ["W. Kozlowski", "S. F. Caballero-Benitez", "I. B. Mekhov"]
+publication_types = ["2"]
+abstract = "We show that light scattering from an ultracold gas reveals not only density correlations, but also matter-field interference at its shortest possible distance in an optical lattice, which defines key properties such as tunneling and matter-field phase gradients. This signal can be enhanced by concentrating probe light between lattice sites rather than at density maxima. As addressing between two single sites is challenging, we focus on global nondestructive scattering, allowing probing order parameters, matter-field quadratures, and their squeezing. The scattering angular distribution displays peaks even if classical diffraction is forbidden and we derive generalized Bragg conditions. Light scattering distinguishes all phases in the Mott insulator–superfluid–Bose glass phase transition."
+featured = false
+publication = "*Physical Review A*"
+url_pdf = "https://link.aps.org/doi/10.1103/PhysRevA.92.013613"
+url_preprint = "https://arxiv.org/abs/1411.7567"
+doi = "10.1103/PhysRevA.92.013613"
++++
+

content/publication/kozlowski-probing-2015/kozlowski-probing-2015.bib

@@ -0,0 +1,12 @@
+@article{kozlowski_probing_2015,
+ author = {Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+ doi = {10.1103/PhysRevA.92.013613},
+ journal = {Physical Review A},
+ month = {July},
+ number = {1},
+ pages = {013613},
+ title = {Probing matter-field and atom-number correlations in optical lattices by global nondestructive addressing},
+ volume = {92},
+ year = {2015}
+}
+

content/publication/kozlowski-quantum-2017/index.md

@@ -0,0 +1,13 @@
++++
+title = "Quantum State Reduction by Matter-Phase-Related Measurements in Optical Lattices"
+date = 2017-02-01
+authors = ["Wojciech Kozlowski", "Santiago F. Caballero-Benitez", "Igor B. Mekhov"]
+publication_types = ["2"]
+abstract = "A many-body atomic system coupled to quantized light is subject to weak measurement. Instead of coupling light to the on-site density, we consider the quantum backaction due to the measurement of matter-phase-related variables such as global phase coherence. We show how this unconventional approach opens up new opportunities to affect system evolution. We demonstrate how this can lead to a new class of final states different from those possible with dissipative state preparation or conventional projective measurements. These states are characterised by a combination of Hamiltonian and measurement properties thus extending the measurement postulate for the case of strong competition with the system’s own evolution."
+featured = false
+publication = "*Scientific Reports*"
+url_pdf = "https://www.nature.com/articles/srep42597"
+url_preprint = "https://arxiv.org/abs/1605.06000"
+doi = "10.1038/srep42597"
++++
+

content/publication/kozlowski-quantum-2017/kozlowski-quantum-2017.bib

@@ -0,0 +1,12 @@
+@article{kozlowski_quantum_2017,
+ author = {Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+ doi = {10.1038/srep42597},
+ issn = {2045-2322},
+ journal = {Scientific Reports},
+ month = {February},
+ pages = {42597},
+ title = {Quantum State Reduction by Matter-Phase-Related Measurements in Optical Lattices},
+ volume = {7},
+ year = {2017}
+}
+

content/publication/mazzucchi-collective-2016/index.md

@@ -0,0 +1,13 @@
++++
+title = "Collective dynamics of multimode bosonic systems induced by weak quantum measurement"
+date = 2016-07-01
+authors = ["Gabriel Mazzucchi", "Wojciech Kozlowski", "Santiago F. Caballero-Benitez", "Igor B. Mekhov"]
+publication_types = ["2"]
+abstract = "In contrast to the fully projective limit of strong quantum measurement, where the evolution is locked to a small subspace (quantum Zeno dynamics), or even frozen completely (quantum Zeno effect), the weak non-projective measurement can effectively compete with standard unitary dynamics leading to nontrivial effects. Here we consider global weak measurement addressing collective variables, thus preserving quantum superpositions due to the lack of which path information. While for certainty we focus on ultracold atoms, the idea can be generalized to other multimode quantum systems, including various quantum emitters, optomechanical arrays, and purely photonic systems with multiple-path interferometers (photonic circuits). We show that light scattering from ultracold bosons in optical lattices can be used for defining macroscopically occupied spatial modes that exhibit long-range coherent dynamics. Even if the measurement strength remains constant, the quantum measurement backaction acts on the atomic ensemble quasi-periodically and induces collective oscillatory dynamics of all the atoms. We introduce an effective model for the evolution of the spatial modes and present an analytic solution showing that the quantum jumps drive the system away from its stable point. We confirm our finding describing the atomic observables in terms of stochastic differential equations."
+featured = false
+publication = "*New Journal of Physics*"
+url_pdf = "https://doi.org/10.1088%2F1367-2630%2F18%2F7%2F073017"
+url_preprint = "https://arxiv.org/abs/1603.04889"
+doi = "10.1088/1367-2630/18/7/073017"
++++
+

content/publication/mazzucchi-collective-2016/mazzucchi-collective-2016.bib

@@ -0,0 +1,13 @@
+@article{mazzucchi_collective_2016,
+ author = {Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+ doi = {10.1088/1367-2630/18/7/073017},
+ issn = {1367-2630},
+ journal = {New Journal of Physics},
+ month = {July},
+ number = {7},
+ pages = {073017},
+ title = {Collective dynamics of multimode bosonic systems induced by weak quantum measurement},
+ volume = {18},
+ year = {2016}
+}
+

content/publication/mazzucchi-quantum-2016/index.md

@@ -0,0 +1,13 @@
++++
+title = "Quantum measurement-induced dynamics of many-body ultracold bosonic and fermionic systems in optical lattices"
+date = 2016-02-01
+authors = ["Gabriel Mazzucchi", "Wojciech Kozlowski", "Santiago F. Caballero-Benitez", "Thomas J. Elliott", "Igor B. Mekhov"]
+publication_types = ["2"]
+abstract = "Trapping ultracold atoms in optical lattices enabled numerous breakthroughs uniting several disciplines. Coupling these systems to quantized light leads to a plethora of new phenomena and has opened up a new field of study. Here we introduce an unusual additional source of competition in a many-body strongly correlated system: We prove that quantum backaction of global measurement is able to efficiently compete with intrinsic short-range dynamics of an atomic system. The competition becomes possible due to the ability to change the spatial profile of a global measurement at a microscopic scale comparable to the lattice period without the need of single site addressing. In coherence with a general physical concept, where new competitions typically lead to new phenomena, we demonstrate nontrivial dynamical effects such as large-scale multimode oscillations, long-range entanglement, and correlated tunneling, as well as selective suppression and enhancement of dynamical processes beyond the projective limit of the quantum Zeno effect. We demonstrate both the breakup and protection of strongly interacting fermion pairs by measurement. Such a quantum optical approach introduces into many-body physics novel processes, objects, and methods of quantum engineering, including the design of many-body entangled environments for open systems."
+featured = false
+publication = "*Physical Review A*"
+url_pdf = "https://link.aps.org/doi/10.1103/PhysRevA.93.023632"
+url_preprint = "https://arxiv.org/abs/1503.08710"
+doi = "10.1103/PhysRevA.93.023632"
++++
+

content/publication/mazzucchi-quantum-2016/mazzucchi-quantum-2016.bib

@@ -0,0 +1,12 @@
+@article{mazzucchi_quantum_2016,
+ author = {Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Elliott, Thomas J. and Mekhov, Igor B.},
+ doi = {10.1103/PhysRevA.93.023632},
+ journal = {Physical Review A},
+ month = {February},
+ number = {2},
+ pages = {023632},
+ title = {Quantum measurement-induced dynamics of many-body ultracold bosonic and fermionic systems in optical lattices},
+ volume = {93},
+ year = {2016}
+}
+

content/publication/publications.bib

@@ -0,0 +1,138 @@
+
+@article{kozlowski_quantum_2017,
+	title = {Quantum {State} {Reduction} by {Matter}-{Phase}-{Related} {Measurements} in {Optical} {Lattices}},
+	volume = {7},
+	copyright = {2017 Nature Publishing Group},
+	issn = {2045-2322},
+	url = {https://www.nature.com/articles/srep42597},
+	doi = {10.1038/srep42597},
+	abstract = {A many-body atomic system coupled to quantized light is subject to weak measurement. Instead of coupling light to the on-site density, we consider the quantum backaction due to the measurement of matter-phase-related variables such as global phase coherence. We show how this unconventional approach opens up new opportunities to affect system evolution. We demonstrate how this can lead to a new class of final states different from those possible with dissipative state preparation or conventional projective measurements. These states are characterised by a combination of Hamiltonian and measurement properties thus extending the measurement postulate for the case of strong competition with the system’s own evolution.},
+	language = {en},
+	urldate = {2019-02-07},
+	journal = {Scientific Reports},
+	author = {Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+	month = feb,
+	year = {2017},
+	pages = {42597},
+	file = {Full Text PDF:/home/wojtek/Zotero/storage/JG32Q99Y/Kozlowski et al. - 2017 - Quantum State Reduction by Matter-Phase-Related Me.pdf:application/pdf;Snapshot:/home/wojtek/Zotero/storage/M69DXSEV/srep42597.html:text/html}
+}
+
+@article{mazzucchi_collective_2016,
+	title = {Collective dynamics of multimode bosonic systems induced by weak quantum measurement},
+	volume = {18},
+	issn = {1367-2630},
+	url = {https://doi.org/10.1088%2F1367-2630%2F18%2F7%2F073017},
+	doi = {10.1088/1367-2630/18/7/073017},
+	language = {en},
+	number = {7},
+	urldate = {2019-02-07},
+	journal = {New Journal of Physics},
+	author = {Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+	month = jul,
+	year = {2016},
+	pages = {073017},
+	file = {IOP Full Text PDF:/home/wojtek/Zotero/storage/IP9P4EJZ/Mazzucchi et al. - 2016 - Collective dynamics of multimode bosonic systems i.pdf:application/pdf}
+}
+
+@article{kozlowski_non-hermitian_2016,
+	title = {Non-{Hermitian} dynamics in the quantum {Zeno} limit},
+	volume = {94},
+	url = {https://link.aps.org/doi/10.1103/PhysRevA.94.012123},
+	doi = {10.1103/PhysRevA.94.012123},
+	abstract = {We show that weak measurement leads to unconventional quantum Zeno dynamics with Raman-like transitions via virtual states outside the Zeno subspace. We extend this concept into the realm of non-Hermitian dynamics by showing that the stochastic competition between measurement and a system's own dynamics can be described by a non-Hermitian Hamiltonian. We obtain a solution for ultracold bosons in a lattice and show that a dark state of tunneling is achieved as a steady state in which the observable's fluctuations are zero and tunneling is suppressed by destructive matter-wave interference.},
+	number = {1},
+	urldate = {2019-02-07},
+	journal = {Physical Review A},
+	author = {Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+	month = jul,
+	year = {2016},
+	pages = {012123},
+	file = {APS Snapshot:/home/wojtek/Zotero/storage/7VKZZQKP/PhysRevA.94.html:text/html;Full Text PDF:/home/wojtek/Zotero/storage/3Y8N66ZD/Kozlowski et al. - 2016 - Non-Hermitian dynamics in the quantum Zeno limit.pdf:application/pdf}
+}
+
+@article{elliott_probing_2015,
+	title = {Probing and {Manipulating} {Fermionic} and {Bosonic} {Quantum} {Gases} with {Quantum} {Light}},
+	volume = {3},
+	copyright = {http://creativecommons.org/licenses/by/3.0/},
+	url = {https://www.mdpi.com/2218-2004/3/3/392},
+	doi = {10.3390/atoms3030392},
+	abstract = {We study the atom-light interaction in the fully quantum regime, with the focus on off-resonant light scattering into a cavity from ultracold atoms trapped in an optical lattice. The detection of photons allows the quantum nondemolition (QND) measurement of quantum correlations of the atomic ensemble, distinguishing between different quantum states. We analyse the entanglement between light and matter and show how it can be exploited for realising multimode macroscopic quantum superpositions, such as Schrödinger cat states, for both bosons and fermions. We provide examples utilising different measurement schemes and study their robustness to decoherence. Finally, we address the regime where the optical lattice potential is a quantum dynamical variable and is modified by the atomic state, leading to novel quantum phases and significantly altering the phase diagram of the atomic system.},
+	language = {en},
+	number = {3},
+	urldate = {2019-02-07},
+	journal = {Atoms},
+	author = {Elliott, Thomas J. and Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Mekhov, Igor B.},
+	month = sep,
+	year = {2015},
+	keywords = {cavity QED, many-body quantum systems, quantum light-matter interactions, quantum nondemolition measurement},
+	pages = {392--406},
+	file = {Full Text PDF:/home/wojtek/Zotero/storage/3VNQ36WU/Elliott et al. - 2015 - Probing and Manipulating Fermionic and Bosonic Qua.pdf:application/pdf;Snapshot:/home/wojtek/Zotero/storage/BS9QK6BF/392.html:text/html}
+}
+
+@article{mazzucchi_quantum_2016,
+	title = {Quantum measurement-induced dynamics of many-body ultracold bosonic and fermionic systems in optical lattices},
+	volume = {93},
+	url = {https://link.aps.org/doi/10.1103/PhysRevA.93.023632},
+	doi = {10.1103/PhysRevA.93.023632},
+	abstract = {Trapping ultracold atoms in optical lattices enabled numerous breakthroughs uniting several disciplines. Coupling these systems to quantized light leads to a plethora of new phenomena and has opened up a new field of study. Here we introduce an unusual additional source of competition in a many-body strongly correlated system: We prove that quantum backaction of global measurement is able to efficiently compete with intrinsic short-range dynamics of an atomic system. The competition becomes possible due to the ability to change the spatial profile of a global measurement at a microscopic scale comparable to the lattice period without the need of single site addressing. In coherence with a general physical concept, where new competitions typically lead to new phenomena, we demonstrate nontrivial dynamical effects such as large-scale multimode oscillations, long-range entanglement, and correlated tunneling, as well as selective suppression and enhancement of dynamical processes beyond the projective limit of the quantum Zeno effect. We demonstrate both the breakup and protection of strongly interacting fermion pairs by measurement. Such a quantum optical approach introduces into many-body physics novel processes, objects, and methods of quantum engineering, including the design of many-body entangled environments for open systems.},
+	number = {2},
+	urldate = {2019-02-07},
+	journal = {Physical Review A},
+	author = {Mazzucchi, Gabriel and Kozlowski, Wojciech and Caballero-Benitez, Santiago F. and Elliott, Thomas J. and Mekhov, Igor B.},
+	month = feb,
+	year = {2016},
+	pages = {023632},
+	file = {APS Snapshot:/home/wojtek/Zotero/storage/ZRTPQGVA/PhysRevA.93.html:text/html;Full Text PDF:/home/wojtek/Zotero/storage/V2G8VPX6/Mazzucchi et al. - 2016 - Quantum measurement-induced dynamics of many-body .pdf:application/pdf}
+}
+
+@article{elliott_multipartite_2015,
+	title = {Multipartite {Entangled} {Spatial} {Modes} of {Ultracold} {Atoms} {Generated} and {Controlled} by {Quantum} {Measurement}},
+	volume = {114},
+	url = {https://link.aps.org/doi/10.1103/PhysRevLett.114.113604},
+	doi = {10.1103/PhysRevLett.114.113604},
+	abstract = {We show that the effect of measurement backaction results in the generation of multiple many-body spatial modes of ultracold atoms trapped in an optical lattice, when scattered light is detected. The multipartite mode entanglement properties and their nontrivial spatial overlap can be varied by tuning the optical geometry in a single setup. This can be used to engineer quantum states and dynamics of matter fields. We provide examples of multimode generalizations of parametric down-conversion, Dicke, and other states; investigate the entanglement properties of such states; and show how they can be transformed into a class of generalized squeezed states. Furthermore, we propose how these modes can be used to detect and measure entanglement in quantum gases.},
+	number = {11},
+	urldate = {2019-02-07},
+	journal = {Physical Review Letters},
+	author = {Elliott, T. J. and Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+	month = mar,
+	year = {2015},
+	pages = {113604},
+	file = {APS Snapshot:/home/wojtek/Zotero/storage/XLV69NXE/PhysRevLett.114.html:text/html;Full Text PDF:/home/wojtek/Zotero/storage/QINRWYWK/Elliott et al. - 2015 - Multipartite Entangled Spatial Modes of Ultracold .pdf:application/pdf}
+}
+
+@article{kozlowski_probing_2015,
+	title = {Probing matter-field and atom-number correlations in optical lattices by global nondestructive addressing},
+	volume = {92},
+	url = {https://link.aps.org/doi/10.1103/PhysRevA.92.013613},
+	doi = {10.1103/PhysRevA.92.013613},
+	abstract = {We show that light scattering from an ultracold gas reveals not only density correlations, but also matter-field interference at its shortest possible distance in an optical lattice, which defines key properties such as tunneling and matter-field phase gradients. This signal can be enhanced by concentrating probe light between lattice sites rather than at density maxima. As addressing between two single sites is challenging, we focus on global nondestructive scattering, allowing probing order parameters, matter-field quadratures, and their squeezing. The scattering angular distribution displays peaks even if classical diffraction is forbidden and we derive generalized Bragg conditions. Light scattering distinguishes all phases in the Mott insulator–superfluid–Bose glass phase transition.},
+	number = {1},
+	urldate = {2019-02-07},
+	journal = {Physical Review A},
+	author = {Kozlowski, W. and Caballero-Benitez, S. F. and Mekhov, I. B.},
+	month = jul,
+	year = {2015},
+	pages = {013613},
+	file = {APS Snapshot:/home/wojtek/Zotero/storage/2G9FVS7A/PhysRevA.92.html:text/html;Full Text PDF:/home/wojtek/Zotero/storage/V7VGLRNS/Kozlowski et al. - 2015 - Probing matter-field and atom-number correlations .pdf:application/pdf}
+}
+
+@article{granqvist_buffering_2012,
+	title = {Buffering {Capacity} {Explains} {Signal} {Variation} in {Symbiotic} {Calcium} {Oscillations}},
+	volume = {160},
+	copyright = {© 2012 American Society of Plant Biologists. All Rights Reserved..},
+	issn = {0032-0889, 1532-2548},
+	url = {http://www.plantphysiol.org/content/160/4/2300},
+	doi = {10.1104/pp.112.205682},
+	abstract = {Legumes form symbioses with rhizobial bacteria and arbuscular mycorrhizal fungi that aid plant nutrition. A critical component in the establishment of these symbioses is nuclear-localized calcium (Ca2+) oscillations. Different components on the nuclear envelope have been identified as being required for the generation of the Ca2+ oscillations. Among these an ion channel, Doesn't Make Infections1, is preferentially localized on the inner nuclear envelope and a Ca2+ ATPase is localized on both the inner and outer nuclear envelopes. Doesn't Make Infections1 is conserved across plants and has a weak but broad similarity to bacterial potassium channels. A possible role for this cation channel could be hyperpolarization of the nuclear envelope to counterbalance the charge caused by the influx of Ca2+ into the nucleus. Ca2+ channels and Ca2+ pumps are needed for the release and reuptake of Ca2+ from the internal store, which is hypothesized to be the nuclear envelope lumen and endoplasmic reticulum, but the release mechanism of Ca2+ remains to be identified and characterized. Here, we develop a mathematical model based on these components to describe the observed symbiotic Ca2+ oscillations. This model can recapitulate Ca2+ oscillations, and with the inclusion of Ca2+-binding proteins it offers a simple explanation for several previously unexplained phenomena. These include long periods of frequency variation, changes in spike shape, and the initiation and termination of oscillations. The model also predicts that an increase in buffering capacity in the nucleoplasm would cause a period of rapid oscillations. This phenomenon was observed experimentally by adding more of the inducing signal.},
+	language = {en},
+	number = {4},
+	urldate = {2019-03-31},
+	journal = {Plant Physiology},
+	author = {Granqvist, Emma and Wysham, Derin and Hazledine, Saul and Kozlowski, Wojciech and Sun, Jongho and Charpentier, Myriam and Martins, Teresa Vaz and Haleux, Pauline and Tsaneva-Atanasova, Krasimira and Downie, J. Allan and Oldroyd, Giles E. D. and Morris, Richard J.},
+	month = dec,
+	year = {2012},
+	pmid = {23027664},
+	pages = {2300--2310},
+	file = {Full Text PDF:/home/wojtek/Zotero/storage/5R7AQD46/Granqvist et al. - 2012 - Buffering Capacity Explains Signal Variation in Sy.pdf:application/pdf;Snapshot:/home/wojtek/Zotero/storage/XAFMQZKV/2300.html:text/html}
+}