%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Books, theses, reference material
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@book{foot,
  author = {Foot, C. J.},
  title = {{Atomic Physics}},
  publisher = {Oxford University Press},
  year = {2005}
}
@book{giamarchi,
  author = {Giamarchi, T.},
  title = {{Quantum Physics in One Dimension}},
  publisher = {Clarendon Press, Oxford},
  year = {2003}
}
@phdthesis{weitenbergThesis,
  author = {Weitenberg, Christof},
  number = {April},
  title = {{Single-Atom Resolved Imaging and Manipulation in an Atomic
                  Mott Insulator}},
  year = {2011}
}
@article{steck,
  author = {Steck, Daniel Adam},
  title = {{Rubidium 87 D Line Data Author contact information :}},
  url = {http://steck.us/alkalidata}
}
@inbook{Scully,
  author = {Scully, M. and Zubairy, S.},
  title = {{Quantum Optics}},
  publisher = {Cambridge University Press},
  chapter = {10.1},
  pages = {293},
  year = {1997}
}
@misc{tnt,
  howpublished="\url{http://ccpforge.cse.rl.ac.uk/gf/project/tntlibrary/}"
}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Igor's original papers
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@article{mekhov2007prl,
  title={Cavity-enhanced light scattering in optical lattices to probe
                  atomic quantum statistics},
  author={Mekhov, Igor B and Maschler, Christoph and Ritsch, Helmut},
  journal={Physical review letters},
  volume={98},
  number={10},
  pages={100402},
  year={2007},
  publisher={APS}
}
@article{mekhov2007pra,
  title={Light scattering from ultracold atoms in optical lattices as
                  an optical probe of quantum statistics},
  author={Mekhov, Igor B and Maschler, Christoph and Ritsch, Helmut},
  journal={Physical Review A},
  volume={76},
  number={5},
  pages={053618},
  year={2007},
  publisher={APS}
}
@article{mekhov2008,
  title = {Dicke quantum phase transition with a superfluid gas in an
                  optical cavity},
  author = {Maschler, C. and Mekhov, I. B. and Ritsch, H.},
  journal = {Eur. Phys. J. D},
  volume = {146},
  pages = {545},
  year = {2008},
}
@article{mekhov2009prl,
  author = {Mekhov, Igor B and Ritsch, Helmut},
  doi = {10.1103/PhysRevLett.102.020403},
  journal = {Phys. Rev. Lett.},
  month = jan,
  number = {2},
  pages = {020403},
  title = {{Quantum Nondemolition Measurements and State Preparation
                  in Quantum Gases by Light Detection}},
  volume = {102},
  year = {2009}
}
@article{mekhov2009pra,
  author = {Mekhov, Igor B and Ritsch, Helmut},
  doi = {10.1103/PhysRevA.80.013604},
  journal = {Phys. Rev. A},
  month = jul,
  number = {1},
  pages = {013604},
  title = {{Quantum optics with quantum gases: Controlled state
                  reduction by designed light scattering}},
  volume = {80},
  year = {2009}
}
@article{LP2009,
  title={Quantum optics with quantum gases},
  author={Mekhov, Igor B and Ritsch, Helmut},
  journal={Laser physics},
  volume={19},
  number={4},
  pages={610--615},
  year={2009},
  publisher={Springer}
}
@article{LP2010,
  author = {Mekhov, Igor B and Ritsch, Helmut},
  doi = {10.1134/S1054660X10050105},
  journal = {Laser Phys.},
  volume = {20},
  pages = {694},
  title = {Quantum Optical Measurements in Ultracold Gases:
                  Macroscopic Bose–Einstein Condensates},
  year = {2010}
}
@article{LP2011,
  author = {Mekhov, Igor B and Ritsch, Helmut},
  doi = {10.1134/S1054660X11150163},
  journal = {Laser Phys.},
  volume = {21},
  pages = {1486},
  title = {Atom State Evolution and Collapse in Ultracold Gases during
                  Light Scattering into a Cavity},
  year = {2011}
}
@article{LP2013,
  author={Igor B Mekhov},
  title={Quantum non-demolition detection of polar molecule complexes:
                  dimers, trimers, tetramers},
  journal={Laser Phys.},
  volume={23},
  number={1},
  pages={015501},
  year={2013},
}
@article{mekhov2012,
  title={Quantum optics with ultracold quantum gases: towards the full
                  quantum regime of the light--matter interaction},
  author={Mekhov, Igor B and Ritsch, Helmut},
  journal={Journal of Physics B: Atomic, Molecular and Optical
                  Physics},
  volume={45},
  number={10},
  pages={102001},
  year={2012},
  publisher={IOP Publishing}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Group papers
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@article{elliott2015,
  author = {Elliott, T. J. and Kozlowski, W. and Caballero-Benitez,
                  S. F. and Mekhov, I. B.},
  doi = {10.1103/PhysRevLett.114.113604},
  journal = {Phys. Rev. Lett.},
  pages = {113604},
  title = {{Multipartite Entangled Spatial Modes of Ultracold Atoms
                  Generated and Controlled by Quantum Measurement}},
  volume = {114},
  year = {2015}
}
@article{atoms2015,
  title={Probing and Manipulating Fermionic and Bosonic Quantum Gases
                  with Quantum Light},
  author={Elliott, Thomas J and Mazzucchi, Gabriel and Kozlowski,
                  Wojciech and Caballero-Benitez, Santiago F and
                  Mekhov, Igor B},
  journal={Atoms},
  volume={3},
  number={3},
  pages={392--406},
  year={2015},
  publisher={Multidisciplinary Digital Publishing Institute}
}
@article{mazzucchi2016,
  title = {Quantum measurement-induced dynamics of many-body ultracold
                  bosonic and fermionic systems in optical lattices},
  author = {Mazzucchi, Gabriel and Kozlowski, Wojciech and
                  Caballero-Benitez, Santiago F. and Elliott, Thomas
                  J. and Mekhov, Igor B.},
  journal = {Physical Review A},
  volume = {93},
  issue = {2},
  pages = {023632},
  numpages = {12},
  year = {2016},
  month = {Feb},
  publisher = {American Physical Society}
}
@article{kozlowski2016zeno,
  title={Non-hermitian dynamics in the quantum zeno limit},
  author={Kozlowski, Wojciech and Caballero-Benitez, Santiago F and Mekhov, Igor B},
  journal={arXiv preprint arXiv:1510.04857},
  year={2015}
}
@article{mazzucchi2016af,
  title={Quantum measurement-induced antiferromagnetic order and
                  density modulations in ultracold Fermi gases in
                  optical lattices},
  author={Mazzucchi, Gabriel and Caballero-Benitez, Santiago F and
                  Mekhov, Igor B},
  journal={arXiv preprint arXiv:1510.04883},
  year={2015}
}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Other papers
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

@article{walters2013,
title = {Ab initio derivation of Hubbard models for cold atoms in
                  optical lattices},
author = {Walters, R. and Cotugno, G. and Johnson, T. H. and Clark,
                  S. R. and Jaksch, D.},
journal = {Phys. Rev. A},
volume = {87},
pages = {043613},
year = {2013},
month = {Apr},
doi = {10.1103/PhysRevA.87.043613},
}
@article{bloch2011,
  title = {Single-spin addressing in an atomic Mott insulator},
  author = {Weitenberg, C. and Endres, M. and Sherson, J. F. and
                  Cheneau, M. and Schauss, P. and Fukuhara, T. and
                  Bloch, I. and Kuhr, S.},
  journal = {Nature},
  volume = {471},
  pages = {319--324},
  year = {2011},
  doi = {10.1038/nature09827},
}
@article{greiner2009,
  title = {A quantum gas microscope for detecting single atoms in a
                  Hubbard-regime optical lattice},
  author = {Bakr, W. S. and Gillen, J. I. and Peng, A. and Folling,
                  S. and Greiner, M.},
  journal = {Nature},
  volume = {462},
  pages = {74--77},
  year = {2009},
  doi = {10.1038/nature08482},
}
@article{cirac1996,
  title={Continuous observation of interference fringes from Bose
                  condensates},
  author={Cirac, J I and Gardiner, C W and Naraschewski, M and Zoller,
                  P},
  journal={Physical Review A},
  volume={54},
  number={5},
  pages={R3714},
  year={1996},
  publisher={APS}
}
@article{castin1997,
  title={Relative phase of two Bose-Einstein condensates},
  author={Castin, Yvan and Dalibard, Jean},
  journal={Physical Review A},
  volume={55},
  number={6},
  pages={4330},
  year={1997},
  publisher={APS}
}
@article{ruostekoski1997,
  title={Nondestructive optical measurement of relative phase between
                  two Bose-Einstein condensates},
  author={Ruostekoski, Janne and Walls, Dan F},
  journal={Physical Review A},
  volume={56},
  number={4},
  pages={2996},
  year={1997},
  publisher={APS}
}
@article{ruostekoski1998,
  title={Macroscopic superpositions of Bose-Einstein condensates},
  author={Ruostekoski, Janne and Collett, M J and Graham, Robert and
                  Walls, Dan F},
  journal={Physical Review A},
  volume={57},
  number={1},
  pages={511},
  year={1998},
  publisher={APS}
}
@article{ashida2015,
  title={Diffraction-Unlimited Position Measurement of Ultracold Atoms
                  in an Optical Lattice},
  author={Ashida, Yuto and Ueda, Masahito},
  journal={Physical review letters},
  volume={115},
  number={9},
  pages={095301},
  year={2015},
  publisher={APS}
}
@article{ashida2015a,
  title={Multi-Particle Quantum Dynamics under Continuous
                  Observation},
  author={Ashida, Yuto and Ueda, Masahito},
  journal={arXiv preprint arXiv:1510.04001},
  year={2015}
}
@article{rogers2014,
  title={Characterization of Bose-Hubbard models with quantum
                  nondemolition measurements},
  author={Rogers, B and Paternostro, M and Sherson, J F and De Chiara,
                  G},
  journal={Physical Review A},
  volume={90},
  number={4},
  pages={043618},
  year={2014},
  publisher={APS}
}
@article{rist2012,
  title={Homodyne detection of matter-wave fields},
  author={Rist, Stefan and Morigi, Giovanna},
  journal={Physical Review A},
  volume={85},
  number={5},
  pages={053635},
  year={2012},
  publisher={APS}
}
@article{weitenberg2011,
  title={Coherent light scattering from a two-dimensional Mott
                  insulator},
  author={Weitenberg, Christof and Schau{\ss}, Peter and Fukuhara,
                  Takeshi and Cheneau, Marc and Endres, Manuel and
                  Bloch, Immanuel and Kuhr, Stefan},
  journal={Physical review letters},
  volume={106},
  number={21},
  pages={215301},
  year={2011},
  publisher={APS}
}
@article{miyake2011,
  title={Bragg scattering as a probe of atomic wave functions and
                  quantum phase transitions in optical lattices},
  author={Miyake, Hirokazu and Siviloglou, Georgios A and Puentes,
                  Graciana and Pritchard, David E and Ketterle,
                  Wolfgang and Weld, David M},
  journal={Physical review letters},
  volume={107},
  number={17},
  pages={175302},
  year={2011},
  publisher={APS}
}
@article{eckert2008,
  title = {Dicke quantum phase transition with a superfluid gas in an optical cavity},
  author = {Eckert, K. and Romero-Isart, O. and Rodriguez, M. and
                  Lewenstein, M. and Polzik, E. S. and Sanpera, A.},
  journal = {Nat. Phys.},
  volume = {4},
  pages = {50},
  year = {2008},
}
@article{larson2008,
  title = {Mott-Insulator States of Ultracold Atoms in Optical
                  Resonators},
  author = {Larson, Jonas and Damski, Bogdan and Morigi, Giovanna and
                  Lewenstein, Maciej},
  journal = {Phys. Rev. Lett.},
  volume = {100},
  issue = {5},
  pages = {050401},
  numpages = {4},
  year = {2008},
  month = {Feb},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.100.050401},
}
@article{chen2009,
  title = {Bistable Mott-insulator\char21{}to\char21{}superfluid phase
                  transition in cavity optomechanics},
  author = {Chen, W. and Zhang, K. and Goldbaum, D. S. and
                  Bhattacharya, M. and Meystre, P.},
  journal = {Phys. Rev. A},
  volume = {80},
  issue = {1},
  pages = {011801},
  numpages = {4},
  year = {2009},
  month = {Jul},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.80.011801},
}
@article{habibian2013,
  title = {Bose-Glass Phases of Ultracold Atoms due to Cavity
                  Backaction},
  author = {Habibian, Hessam and Winter, Andr\'e and Paganelli, Simone
                  and Rieger, Heiko and Morigi, Giovanna},
  journal = {Phys. Rev. Lett.},
  volume = {110},
  issue = {7},
  pages = {075304},
  numpages = {5},
  year = {2013},
  month = {Feb},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.110.075304},
}
@article{ivanov2014,
  title={Feedback-enhanced self-organization of atoms in an optical cavity},
  author={Ivanov, DA and Ivanova, T Yu},
  journal={JETP letters},
  volume={100},
  number={7},
  pages={481--485},
  year={2014},
  publisher={Springer}
}
@article{caballero2015,
  title={Quantum optical lattices for emergent many-body phases of
                  ultracold atoms},
  author={Caballero-Benitez, Santiago F and Mekhov, Igor B},
  journal={Physical review letters},
  volume={115},
  number={24},
  pages={243604},
  year={2015},
  publisher={APS}
}
@article{pedersen2014,
  author={Mads Kock Pedersen and Jens Jakob W H Sorensen and Malte C
                  Tichy and Jacob F Sherson},
  title={{Many-body state engineering using measurements and fixed
                  unitary dynamics}},
  journal={New J. Phys.},
  volume={16},
  number={11},
  pages={113038},
  year={2014}
}
@article{kolobov1999,
  title = {The spatial behavior of nonclassical light},
  author = {Kolobov, Mikhail I.},
  journal = {Rev. Mod. Phys.},
  volume = {71},
  issue = {5},
  pages = {1539--1589},
  numpages = {0},
  year = {1999},
  month = {Oct},
  publisher = {American Physical Society},
  doi = {10.1103/RevModPhys.71.1539},
}
@article{golubev2010,
  title = {Entanglement measurement of the quadrature components
                  without homodyne detection in the bright, spatially
                  multimode far field},
  author = {Golubeva, T. and Golubev, Yu. and Samburskaya, K. and
                  Fabre, C. and Treps, N. and Kolobov, M.},
  journal = {Phys. Rev. A},
  volume = {81},
  issue = {1},
  pages = {013831},
  numpages = {8},
  year = {2010},
  month = {Jan},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.81.013831},
}
@article{derrico2014,
  title = {Observation of a Disordered Bosonic Insulator from Weak to
                  Strong Interactions},
  author = {D'Errico, Chiara and Lucioni, Eleonora and Tanzi, Luca and
                  Gori, Lorenzo and Roux, Guillaume and McCulloch, Ian
                  P. and Giamarchi, Thierry and Inguscio, Massimo and
                  Modugno, Giovanni},
  journal = {Phys. Rev. Lett.},
  volume = {113},
  issue = {9},
  pages = {095301},
  numpages = {5},
  year = {2014},
  month = {Aug},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.113.095301},
}
@article{rist2010,
  title = {Light scattering by ultracold atoms in an optical lattice},
  author = {Rist, Stefan and Menotti, Chiara and Morigi, Giovanna},
  journal = {Phys. Rev. A},
  volume = {81},
  issue = {1},
  pages = {013404},
  numpages = {12},
  year = {2010},
  month = {Jan},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.81.013404},
}
@article{lakomy2009,
  title = {Thermal effects in light scattering from ultracold bosons
                  in an optical lattice},
  author = {\L{}akomy, Kazimierz and Idziaszek, Zbigniew and
                  Trippenbach, Marek},
  journal = {Phys. Rev. A},
  volume = {80},
  issue = {4},
  pages = {043404},
  numpages = {14},
  year = {2009},
  month = {Oct},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.80.043404},
}
@article{ruostekoski2009,
  title = {Light Scattering for Thermometry of Fermionic Atoms in an Optical Lattice},
  author = {Ruostekoski, J. and Foot, C. J. and Deb, A. B.},
  journal = {Phys. Rev. Lett.},
  volume = {103},
  issue = {17},
  pages = {170404},
  numpages = {4},
  year = {2009},
  month = {Oct},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.103.170404},
}
@article{kaszlikowski2008,
  title = {Quantum Correlation without Classical Correlations},
  author = {Kaszlikowski, Dagomir and Sen(De), Aditi and Sen, Ujjwal
                  and Vedral, Vlatko and Winter, Andreas},
  journal = {Phys. Rev. Lett.},
  volume = {101},
  issue = {7},
  pages = {070502},
  numpages = {4},
  year = {2008},
  month = {Aug},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevLett.101.070502},
}
@article{horak1999,
  title = {{Creation of coherence in Bose-Einstein condensates by atom detection}},
  author = {Horak, Peter and Barnett, Stephen M},
  journal = {J. Phys. B At. Mol. Opt. Phys.},
  number = {14},
  pages = {3421},
  volume = {32},
  year = {1999},
}
@article{cazalilla2011,
  author = {Cazalilla, M. A. and Citro, R. and Giamarchi, T. and Orignac, E. and Rigol, M.},
  doi = {10.1103/RevModPhys.83.1405},
  journal = {Rev. Mod. Phys.},
  month = dec,
  number = {4},
  pages = {1405--1466},
  title = {{One dimensional bosons: From condensed matter systems to ultracold gases}},
  volume = {83},
  year = {2011}
}
@article{ejima2011,
  author={S. Ejima and H. Fehske and F. Gebhard},
  title={Dynamic properties of the one-dimensional Bose-Hubbard model},
  journal={Europhys. Lett.},
  volume={93},
  number={3},
  pages={30002},
  year={2011},
}
@article{kuhner2000,
  author = {K\"{u}hner, Till D. and White, Steven R. and Monien, H.},
  doi = {10.1103/PhysRevB.61.12474},
  journal = {Phys. Rev. B},
  month = May,
  number = {18},
  pages = {12474--12489},
  title = {{One-dimensional Bose-Hubbard model with nearest-neighbor interaction}},
  volume = {61},
  year = {2000}
}
@article{pino2012,
  title = {Reentrance and entanglement in the one-dimensional Bose-Hubbard model},
  author = {Pino, M. and Prior, J. and Somoza, A. M. and Jaksch, D. and Clark, S. R.},
  journal = {Phys. Rev. A},
  volume = {86},
  issue = {2},
  pages = {023631},
  numpages = {11},
  year = {2012},
  month = {Aug},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.86.023631},
}
@article{pino2013,
  author = {Pino, M. and Prior, J. and Clark, S. R.},
  doi = {10.1002/pssb.201248308},
  journal = {Physica Status Solidi (B)},
  keywords = {bose,hubbard model,mott insulator,re-entrance,superfluid},
  month = Jan,
  number = {1},
  pages = {51--58},
  title = {{Capturing the re-entrant behavior of one-dimensional Bose-Hubbard model}},
  volume = {250},
  year = {2013}
}
@article{roth2003,
  title = {Phase diagram of bosonic atoms in two-color superlattices},
  author = {Roth, Robert and Burnett, Keith},
  journal = {Phys. Rev. A},
  volume = {68},
  issue = {2},
  pages = {023604},
  numpages = {17},
  year = {2003},
  month = {Aug},
  publisher = {American Physical Society},
  doi = {10.1103/PhysRevA.68.023604},
}
@article{batrouni2002,
 archivePrefix = {arXiv},
  arxivId = {cond-mat/0203082},
  author = {Batrouni, G G and Rousseau, V and Scalettar, R T and
                  Rigol, M and Muramatsu, A and Denteneer, P J H and
                  Troyer, M},
  doi = {10.1103/PhysRevLett.89.117203},
  journal = {Phys. Rev. Lett.},
  pages = {117203},
  pmid = {12225165},
  primaryClass = {cond-mat},
  title = {{Mott domains of bosons confined on optical lattices.}},
  volume = {89},
  year = {2002}
}
@article{roux2008,
  author = {Roux, G. and Barthel, T. and McCulloch, I. P. and Kollath,
                  C. and Schollw\"{o}ck, U. and Giamarchi, T.},
  doi = {10.1103/PhysRevA.78.023628},
  journal = {Phys. Rev. A},
  month = aug,
  number = {2},
  pages = {023628},
  title = {{Quasiperiodic Bose-Hubbard model and localization in
                  one-dimensional cold atomic gases}},
  volume = {78},
  year = {2008}
}
@article{vukics2007,
  author = {Vukics, A. and Maschler, C. and Ritsch, H.},
  journal = {New J. Phys},
  volume = {9},
  pages = {255},
  year = {2007},
}